Affinity Propagation

Use affinity propagation to cluster similar gene sets to reduce redundancy in report.

Usage

affinityPropagation(idsInSet, score)

Arguments

idsInSet

A list of set names and their member IDs.

score

A vector of addible scores with the same length used to assign input preference; higher score has larger weight, i.e. -logP.

Value

A list of clusters and representatives for each cluster.

clusters

A list of character vectors of set IDs in each cluster.

representatives

A character vector of representatives for each cluster.

Author

Zhiao Shi, Yuxing Liao