Function reference
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WebGestaltR()
WebGestaltRBatch()
- WebGestaltR: The R interface for enrichment analysis with WebGestalt.
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WebGestaltRMultiOmics()
- WebGestaltRMultiOmics
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WebGestaltRMultiOmicsGSEA()
- Multi-omics GSEA importFrom dplyr bind_rows left_join arrange select desc importFrom readr write_tsv
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WebGestaltRMultiOmicsOra()
- Multi-omics ORA importFrom dplyr bind_rows left_join arrange select desc importFrom readr write_tsv
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affinityPropagation()
- Affinity Propagation
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formatCheck()
- Check Format and Read Data
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goSlimSummary()
- GO Slim Summary
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idMapping()
idToSymbol()
- ID Mapping
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jaccardSim()
- Jaccard Similarity
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kMedoid()
- kMedoid
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listArchiveUrl()
- List WebGestalt Servers
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listGeneSet()
- List Gene Sets
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listIdType()
- List ID Types
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listOrganism()
- List Organisms
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listReferenceSet()
- List Reference Sets
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loadGeneSet()
- Load gene set data
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multiswGsea()
- Site Weighted Gene Set Enrichment Analysis
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prepareGseaInput()
- Prepare input for standard GSEA
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prepareInputMatrixGsea()
- Prepare Input Matrix for GSEA
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readGmt()
- Read GMT File
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swGsea()
- Site Weighted Gene Set Enrichment Analysis
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weightedSetCover()
- Weighted Set Cover